workshop schedule

Date: 8th Jan 2009
10:00AM – 10:30AM Workshop Inauguration at Gyanprasad Hall
10:30AM – 11.00AM Hi Tea
11:00AM – 12:00PM Topic: Structure Based Drug Design

Speaker:Prof. S.B.Padhye
Venue:Gyanprasad Hall
12:00PM – 1:00PM Topic:

Speaker:Dr. Sudheer Kulkarni

Venue:Gyanprasad Hall
1:00PM – 2:00PM Lunch Break
2:00PM – 3:30PM Topic:VLifeMDS software

Speaker:Dr. Manali Joshi
Venue:Computer Lab
3:30PM – 3:45PM Tea Break
3:45PM – 5:00PM Topic:Hyperchem
Expert:Mr.Sagar Nagare
Venue:Computer Lab
Date: 9th Jan 2009
10:00AM – 11:00AM Topic: Schrödinger software applications in drug design
Speaker:Dr. Raghu
Venue:Lecture Hall
11:00AM – 11:15AM Tea Break
11:15AM – 12:30PM Topic: Protein data bank file wizards and cleaning (Schrödinger)
Expert:Dr.Raghu and Dr. Madhavi
Venue:Lecture Hall
12:30PM – 1:30PM Lunch Break
1:30PM – 3:30PM Topic:Protein file preparation for docking and Docking analysis( Schrödinger) Expert:Dr.Raghu and Dr. Madhavi
Venue: Computer Lab
3:30PM – 3:45PM Tea Break
3:45PM – 5:00PM Topic:Molecular simulations (Schrödinger)
Expert:Dr.Raghu and Dr. Madhavi
Venue: Computer Lab

Date: 10th Jan 2009
10:00AM – 11:00AM Topic:Principles Of Molecular docking
Speaker:Dr. Vidya Kothekar
Venue:Lecture Hall
11:00AM – 11:15AMTea Break
11:15AM – 12:30PM Topic:QSAR/ADMET
Speaker:Dr.Karthikeyan
Venue:Lecture Hall
12:30PM – 1:30PM Lunch Break
2:15PM – 3:30PM Topic:Building molecules and QSAR on MOE
Expert:Dr. Karthikeyan
Venue:Computer Lab
3:30PM – 3:45PM Tea Break
3:45PM – 5:00PM Topic:Pharmacophore searching
Expert:Dr.Karthikeyan
Venue:Computer Lab

Participants List

1.Ms.Vrushali (Spicer Memorial college, Aundh, Pune)
2.Deepak Anil Lala (DYPBBI,Akurdi, Pune)
3.Swati Khandelwal (DYPBBI,Akurdi, Pune)
4.Anant jain (DYPBBI,Akurdi, Pune)
5.Satish Lokhande (DYPBBI,Akurdi, Pune)
6. Neha Roy (DYPBBI,Akurdi, Pune)
7.Vinita Lala(DYPBBI,Akurdi, Pune)
8. Alok Vyas (Department of Chemistry, University Of Pune)
9.Deepak chavan (Department of Pharmaceutical chemistry, Dr. D.Y.Patil IPSR, Pimpri, Pune)
10.Ravindra Gowda (DYPBBI, Akurdi, Pune)
11.Mrs. Jyoti Bidwai.(Department of Animal &Plant tissue Culture and Environmental Sciences, DYPBBI, Akurdi, Pune)
12.Divya Prakash (Department of Microbiology, University of Pune)
13.Deepankar (Information Division, NCL, Pune)
14.Shirisha (Information Division, NCL, Pune)
15.Sunil (Information Division, NCL, Pune)
16.Nidhi Malviya (DYPBBI, Akurdi, Pune)
17.Krishna Yadav (DYPBBI, Akurdi, Pune)
18.Surekha Bansal (DYPBBI, Akurdi, Pune)
19.Yathin (Department of Chemistry, University of Pune, Pune)
20.Ms. Ujwala V. Kulkarni(Annasaheb Magar College, Hadapsar, Pune , Pune University.)
21.Ms. Niky A Shirdhankar(Annasaheb Magar College, Hadapsar, Pune , Pune University.)
22.Ms. Priyanka Shrikant Khopkar (Annasaheb Magar Mahavidhyalaya, Hadapsar, Pune)
23.Ms.Deepika Nimje (DYPBBI, Akurdi, Pune)
24.Mr. Ranjit(DYPBBI, Akurdi, Pune )
25.Aishwary Sharma( DYPBBI, Akurdi, Pune )
26.Snehal Vishwas Joglekar (Manipal university, Manipal)
27.Gajanan Pralhad Chakkarwar( DYPBBI, Akurdi, Pune )
28.Priyanka Dubey(DYPBBI, Akurdi, Pune)

Workshop Brochure

Softwares for Hands on experience

HYPERCHEM
MOE
Schrödinger
ONLINE TOOLS FOR CHEMOINFORMATICS

Contact Us

Mail:
workshop2009dypbbi@gmail.com
Phone:
Institute-020-27641885
Fax:

How To Reach?

Dr. D. Y. Patil, Biotechnology and Bioinformatics Institute
Sector No. 29. Arurdi, Pune - 4110044.

Route to the Venue:

• By Airways: Nearest Airport : Lohegoan Airport. (Approximately 20 Km)
• By Railways: Nearest Railway Station : Akurdi Station (Approximately 0.5 Km)
• By Roadways: Nearest Bus Station : Nigdi Bus Station (Approximately 1.5 Km)

Registration form

Name of the participant:
Qualification:
Specialization:
College/University/company:
DD No:
Name of the Bank_______________________
Amount:__________
Date:________
Email ID:_________
Postal Address:__________________________
Accomodation: Required/Not Required

Registration forms and DD should to the Organizing secretary, Dr. D. Y. Patil Biotechnology and Bioinformatics Institute, Akurdi, Pune-44 or Email: workshop2009dypbbi@gmail.com Registration for the workshop will be confirmed through mail. For quick registration send the scanned DD to the given mail ID.

Eligibility and Registration

Eligibility:

• M.Sc ( Bioinformatics,Biotechnology, Biochemistry, Microbiology, Zoology),
• M.Tech, B.Tech Biotechnology and Bioinformatics,
• B.Sc. Biotechnology, B.Pharmacy, D.Pharmacy, M. Phil, Ph.D.
• Researchers and pharmacy industry people.

Registration:

Students: Rs. 500/-

academic faculty:Rs.1000/-

Industry people Rs. 2000/-
Amount should be sent in the form of DD taken from any nationalized bank, Director, DYPBBI, Research A/C NO:087104000167215, Pune. Registration fee includes workshop manual and academic bioinformatics tools. Registration will be on the basis of first come first served. Registrations are limited to 30 only.
No TA /DA will be paid for the participants.

Deadline for registration: 5th Jan , 2009

Speakers

Prof. S.B.Padhye (Dr.D.Y.Patil IPSR, Pimpri, Pune)

Dr. Kulkarni (Vlife sciences, Pune)

Dr. Manali Joshi (Vlife sceinces, Pune)

Dr. Karthikeyan (NCL, Pune)

Dr. Raghu (SchrÖdinger Pvt.Ltd)

Dr. Madhavi sastry (SchrÖdinger Pvt.Ltd)

Dr. V. Kothekar (Director, Dr. D.Y.Patil Biotechnology and Bioinformatics Institute,Pune)

Hands On Experience session Experts

Mr. K. V. Swamy, M.Sc.

Mr.Sagar Nagare, M.tech,

Ms.Sheetal Pandit, M.Sc.

Ms.Sandhya Khatal, M.Sc.

Dr. Renu Vyas

Computer Team

Mr. Pravin More

Mr. Shivanand Birajdar

Ms. Priyanka Bhopale

Topics

1) Overview of Insilico drug design
2) Pharmacophore searching (MOE)
3) QSAR-2D &3D (MOE)
4) Chemical structure Database
5) Introduction to Structure based drug design
6) Protein structures
7) Molecular Docking and simulations (SCHRÖDINGER)
8) Protein-drug interactions(MOE & SCHRÖDINGER)

A National Level Workshop On Essentials of Computer Aided Drug Design

8-10 January, 2009

Over the years discovery of new drugs has become a very time consuming (10-12 years) and expensive (need around700 million US$). Added to this is fierce competition amongst drug companies and failure of many drugs due to toxic side effects and different genetic makeup of individuals. Computational tools have become increasingly important in the drug discovery and design processes. Methods from computational chemistry are used now routinely to study drug-receptor complexes in atomic detail and to calculate properties of small molecule drug candidates. Tools from information sciences and statistics are increasingly essential to help organize and manage the huge chemical and biological activity databases used by pharmaceutical companies. Computer aided drug designing (CADD) can not only reduce cost and time for discovery of new drug entities but also enhance effectiveness of the drugs by reducing critical dose and toxic side effects by attacking disease specific enzyme. The fast developments in the silicon world in terms of memory and speed had made the field more attractive. It has taken laboratory level research to pharmaceutical and chemical companies. India’s Bioinformatics market is currently over 200 million US$ and growing very fast. Many companies are entering into market with their R & D and other business ventures.
Dr. D. Y. Patil Biotechnology & Bioinformatics Institute, Akurdi, is located in sprawling Dr. D. Y. Patil complex in scenic Nigdi pradhikaran area. It is led by eminent Bioinformaticians, Biotechnologists, Molecular Biologists, Biochemists, Industrial Microbiologists, Plant & Animal Biotechnologists etc. The institute has state of art infra structure with well equipped laboratories, lecture theaters with LCD, overhead projectors, and Public address (PA) system. It has well equipped library and laboratories. The computer laboratory has sixty five personal computers with LAN connection and internet facilities. It has well equipped computer laboratory with ninety five personal computers with LAN connection and internet facilities through which students can access scientific literature, lectures by faculty, industry news which would help them to create general awareness in the discipline. It is also possible to access Bioinformatics databases and software, public domain software for molecular graphics and informatics in addition to in house software and application software from commercial vendors (e.g. Molecular Modeling packages:-MOE, Schrödinger, SYSTAT and HYPERCHEM).
The three days workshop on “Essentials of Computer Aided Drug Design” is aimed at providing an overview of several computational tools and their importance in contemporary drug design programs.

The workshop consists of lectures by eminent scientists in the field, demonstrations and hands on various computational tools such: Hyperchem, MOE and Schrödinger.

Dr. D Y Patil Biotechnology & Bioinformatics Institute